Publications

Papers

Akira Nishida, Experience in Developing an Open Source Scalable Software Infrastructure in Japan, In Proceedings of Computational Science and its Applications (ICCSA 2010), Part II, Lecture Notes in Computer Science 6017, pp. 87-98, Springer, 2010.

Tamito Kajiyama, Akira Nukada, Reiji Suda, Hidehiko Hasegawa, and Akira Nishida. Toward Automatic Performance Tuning for Numerical Simulations in the SILC Matrix Computation Framework, In Proceedings of the International Workshop on Automatic Performance Tuning (iWAPT), Lecture Notes in Computer Science, Springer, accepted.

Akihiro Fujii, Reiji Suda, Akira Nishida, and Yoshio Oyanagi. Evaluation of Asynchronous Iterative Method for Sparse Matrix Solver. In Proceedings of the Second international Workshop on Automatic Performance Tuning (iWAPT 2007), pp.43-51, September 20-21, 2007.

Tamito Kajiyama, Akira Nukada, Reiji Suda, Hidehiko Hasegawa, and Akira Nishida. Toward Automatic Performance Tuning for Numerical Simulations in the SILC Matrix Computation Framework. In Proceedings of the Second international Workshop on Automatic Performance Tuning (iWAPT 2007), pp.81-90, September 20-21, 2007 (abstract/slides).

Tamito Kajiyama, Akira Nukada, Reiji Suda, Hidehiko Hasegawa, and Akira Nishida. Cloth simulation in the SILC matrix computation framework: A case study, In Proceedings of the Seventh International Conference on Parallel Processing (PPAM 2007), Lecture Notes in Computer Science 4967, pp.1086-1095, Springer, 2008 (abstract/slides).

Akira Nukada, Daisuke Takahashi, Reiji Suda, and Akira Nishida. High Performance FFT on SGI Altix 3700, In Proceedings of the Third International Conference on High Performance Computing and Communications (HPCC 2007), Lecture Notes in Computer Science 4782, pp.396-407, Springer, 2007.

Akira Nukada, Yuichiro Hourai, Akira Nishida and Yutaka Akiyama. High Performance 3D Convolution for Protein Docking on IBM Blue Gene, In Proceedings of the Fifth International Symposium on Parallel and Distributed Processing and Applications (ISPA07), Lecture Notes in Computer Science 4742, pp.958-969, Springer, 2007.

Tamito Kajiyama, Akira Nukada, Reiji Suda, Hidehiko Hasegawa, and Akira Nishida. A Performance Evaluation Model for the SILC Matrix Computation Framework, In Proceedings of the IFIP International Conference on Network and Parallel Computing (NPC 2006), pp.93-103, October 2-4, 2006 (abstract/slides).

Tamito Kajiyama, Akira Nukada, Reiji Suda, Hidehiko Hasegawa, and Akira Nishida. Distributed SILC: An Easy-to-Use Interface for MPI-based Parallel Matrix Computation Libraries. In Proceedings of 2006 Workshop on State-of-the-Art in Scientific and Parallel Computing (PARA'06), Lecture Notes in Computer Science 4699, pp.860-870, Springer, 2007 (abstract/slides).

Akira Nishida. Building Cost Effective High Performance Computing Environment via PCI Express. In Proceedings of the 2006 International Conference on Parallel Processing Workshops (ICPPW2006), pp.519-526, IEEE, 2006.

Akira Nukada. FFTSS: a High Performance Fast Fourier Transform Library, In Proceedings of the 2006 IEEE International Conference on Acoustics, Speech, and Signal Processing (ICASSP 2006), Vol. III, pp.980-983, IEEE, May 14-19, 2006, Toulouse.

Akihiro Fujii, Akira Nishida, and Yoshio Oyanagi, Evaluation of Parallel Aggregate Creation Orders : Smoothed Aggregation Algebraic Multigrid Method, In IFIP International Federation for Information Processing, Vol. 172, pp.99-122, Springer, 2005.

Hisashi Kotakemori, Hidehiko Hasegawa, and Akira Nishida, Performance Evaluation of a Parallel Iterative Method Library using OpenMP, In Proceedings of the 8th International Conference on High Performance Computing in Asia Pacific Region (HPC Asia 2005), pp.432-436, IEEE, 2005 (abstract/slides).

Tamito Kajiyama, Akira Nukada, Hidehiko Hasegawa, Reiji Suda, and Akira Nishida, LAPACK in SILC: Use of a Flexible Application Framework for Matrix Computation Libraries, In Proceedings of the 8th International Conference on High Performance Computing in Asia Pacific Region (HPC Asia 2005), pp.205-212, IEEE, 2005 (abstract/slides).

Akihiro Fujii, Reiji Suda, and Akira Nishida, Parallel Matrix Distribution Library for Sparse Matrix Solvers, In Proceedings of the 8th International Conference on High Performance Computing in Asia Pacific Region (HPC Asia 2005), pp.213-219, IEEE, 2005 (abstract/slides).

Tamito Kajiyama, Akira Nukada, Hidehiko Hasegawa, Reiji Suda, and Akira Nishida, SILC: A Flexible and Environment Independent Interface for Matrix Computation Libraries, In Proceedings of the Sixth International Conference on Parallel Processing and Applied Mathematics (PPAM2005), Lecture Notes in Computer Science 3911, pp.928-935, Springer, 2006 (abstract/slides).

Hisashi Kotakemori, Hidehiko Hasegawa, Tamito Kajiyama, Akira Nukada, Reiji Suda, and Akira Nishida, Performance Evaluation of Parallel Sparse Matrix-Vector Products on SGI Altix3700, In Proceedings of the First International Workshop on OpenMP (IWOMP2005), Lecture Notes in Computer Science 4315, pp.153-163, Springer, 2008 (abstract/slides).

Yuichiro Hourai, Akira Nishida, and Yoshio Oyanagi, Network-aware Data Mapping on Parallel Molecular Dynamics, In Proceedings of 11th International Conference on Parallel and Distributed Systems (ICPADS2005), pp.126-132, IEEE, 2005.

Reiji Suda, Fast spherical harmonic transform routine FLTSS applied to the shallow water test set, Monthly Weather Review, Vol. 133, No. 3, pp. 634-648, 2005.

Akihiro Fujii, Akira Nishida, and Yoshio Oyanagi. The Evaluation of the Aggregate Creation Orders : Smoothed Aggregation Algebraic MultiGrid Method. In Proceedings of International Symposium on High Performance Computational Science and Engineering (HPCSE-04), CDROM, 2004.

Reiji Suda. Stability analysis of the fast Legendre transform algorithm based on the fast multipole method. Proc. Est. Acad. Sci. Phys. Math., Vol.53, No.2, pp.116-123, Estonian Academiy of Science, 2004.

Akira Nishida and Yoshio Oyanagi. Performance Evaluation of Low Level Multithreaded BLAS Kernels on Intel Processor based cc-NUMA Systems. In Proceedings of 2003 International Workshop on OpenMP:Experiences and Implementations (WOMPEI2003), Lecture Notes in Computer Science 2858, pp.500-510, Springer, 2003.

Akira Nishida, Development of General Purpose Numerical Software Infrastructure for Large Scale Scientific Computing, In Annual Report of the Earth Simulator Center, April 2008 - September 2008, The Earth Simulator Center, Japan Agency for Marine-Earth Science and Technology, pp.113-117, 2010.

Akira Nishida, Development of General Purpose Numerical Software Infrastructure for Large Scale Scientific Computing, In Annual Report of the Earth Simulator Center, April 2008 - September 2008, The Earth Simulator Center, Japan Agency for Marine-Earth Science and Technology, pp.129-133, 2009.

Akira Nishida, Development of General Purpose Numerical Software Infrastructure for Large Scale Scientific Computing, In Annual Report of the Earth Simulator Center, April 2008 - September 2008, The Earth Simulator Center, Japan Agency for Marine-Earth Science and Technology, pp.129-133, 2009.

Akira Nishida, Development of General Purpose Numerical Software Infrastructure for Large Scale Scientific Computing, In Annual Report of the Earth Simulator Center, April 2007 - March 2008, The Earth Simulator Center, Japan Agency for Marine-Earth Science and Technology, pp.137-145, 2008.

Akira Nishida, Akira Nukada, Hisashi Kotakemori, and Tamito Kajiyama, Development of General Purpose Numerical Software Infrastructure for Large Scale Scientific Computing, In Annual Report of the Earth Simulator Center, April 2006 - March 2007, The Earth Simulator Center, Japan Agency for Marine-Earth Science and Technology, pp.139-144, 2007.

Tamito Kajiyama, Akira Nukada, Hidehiko Hasegawa, Reiji Suda, and Akira Nishida, Numerical Simulations in the SILC Matrix Computation Framework, In Proceedings of the International Conference on Computational Methods 2007 (ICCM 2007), p.235, April 4-6, 2007 (abstract/slides).

Akira Nishida, Hisashi Kotakemori, Akihiro Fujii, and Akira Nukada, Development of Scalable Software Infrastructure on Blue Gene Systems, In Report on the Juelich Blue Gene/L Scaling Workshop 2006 (FZJ-ZAM-IB-2007-02), John von Neumann Institute for Computing, Research Centre Juelich, February, 2007.

Akira Nishida, Hisashi Kotakemori, Tamito Kajiyama, and Akira Nukada, Scalable Software Infrastructure Project, SC06, Poster, November 11-17, 2006, Tampa, USA. (poster)

Hidehiko Hasegawa, Tomohiro Sogabe, Takeshi Ogita, and Tamito Kajiyama, Comparison of conjugate gradient method for nonsymmetric matrices, In Joint GAMM-SIAM Conference on Applied Linear Algebra (ALA 2006), July 24-27, 2006, Düsseldorf, Germany.

Akira Nishida. High Performance Computing over Finite Fields, IEICE ISEC Conference, May 19, 2006.

Reiji Suda. Fast Spherical Harmonic Transform with the Generalized Fast Multipole Method. 2005 International Conference on Scientific Computation and Differential Equations, May 23-27, 2005, Nagoya.

Akira Nishida. AMG Preconditioned Conjugate Gradient Type Methods for Nonsymmetric Eigenproblems. Twelfth Copper Mountain Conference on Multigrid Methods, April 3-8, 2005, Aspen.

Akira Nishida. SSI: Overview of Simulation Software Infrastructure for Large Scale Scientific Applications, In Proceedings of the International Workshops on Advances in Computational Mechanics (IWACOM2004), p.163, 2004, Tokyo.

Akihiro Fujii, Akira Nishida, and Yoshio Oyanagi. Vectorized Algebraic Multigrid Algorithm for Unstructured Finite Element Problems. 6th International Meeting on High Performance Computing for Computational Science (VECPAR2004), June 28-30, 2004, Valencia.

Akira Nishida. Performance Evaluation of Intel Processor based cc-NUMA Systems for Scalable Iterative Solvers. Eigth Copper Mountain Conference on Iterative Methods, March 28-April 2, 2004, Aspen.

Akira Nishida. SSI: Development of Simulation Software Infrastructure. Eleventh SIAM Conference on Parallel Processing for Scientific Computing, February 25-27, 2004, San Francisco.

Shao-liang Zhang, and Tomohiro Sogabe. The Bi-CR Method for Nonsymmetric Linear Systems. International Conference on Numerical Linear Algebra and Optimization, October 7-11, 2003, Guiling.

Kuniyoshi Abe, Shao-liang Zhang, and Masaaki Sugihara. Necessary and Sufficient Conditions for Convergence of GCR and GMRES Methods on Singular Systems. International Conference on Numerical Linear Algebra and Optimization, October 7-11, 2003, Guiling.

Reiji Suda. FLTSS - the Fast Legendre Transform with Stable Sampling and interpolation. In Proceedings of the Second International Conference on Approximation Methods and Orthogonal Expansions, September 12-14, 2003, Estonia.

Kengo Nakajima. Implementing SuperLU on Contact Problems. Fourth Workshop on the DOE Advanced Computational Software Collection, August 5-8, 2003, Berkeley.

Tomohiro Sogabe, C. Jin, Kuniyoshi Abe, and Shao-liang Zhang. On the Improvement of the CGS Method. 5th International Congress on Industrial and Applied Mathematics, July 7-11, 2003, Sydney.

Akira Nishida. Efficient Parallel Implementation of Jacobi-Davidson Method for Shared Memory Architectures. 5th International Congress on Industrial and Applied Mathematics, July 7-11, 2003, Sydney.

Kengo Nakajima. Parallel Iterative Solves for Solid Earth Simulation on the Earth Simulator, Sixth IMACS International Symposium on Iterative Methods in Scientific Computing, March 27-30, 2003, Denver.