Publications

Papers

A. Fujii, R. Suda, A. Nishida, and Y. Oyanagi. Evaluation of Asynchronous Iterative Method for Sparse Matrix Solver. In Proceedings of the Second international Workshop on Automatic Performance Tuning (iWAPT 2007), pp.43-51, September 20-21, 2007.

T. Kajiyama, A. Nukada, R. Suda, H. Hasegawa, and A. Nishida. Toward Automatic Performance Tuning for Numerical Simulations in the SILC Matrix Computation Framework. In Proceedings of the Second international Workshop on Automatic Performance Tuning (iWAPT 2007), pp.81-90, September 20-21, 2007 (abstract/slides).

T. Kajiyama, A. Nukada, R. Suda, H. Hasegawa, and A. Nishida. Cloth simulation in the SILC matrix computation framework: A case study, In Proceedings of the Seventh International Conference on Parallel Processing (PPAM 2007), Lecture Notes in Computer Science 4967, pp.1086-1095, Springer, 2008 (abstract/slides).

A. Nukada, D. Takahashi, R. Suda, and A. Nishida. High Performance FFT on SGI Altix 3700, In Proceedings of the Third International Conference on High Performance Computing and Communications (HPCC 2007), Lecture Notes in Computer Science 4782, pp.396-407, Springer, 2007.

A. Nukada, Y. Hourai, A. Nishida and Y. Akiyama. High Performance 3D Convolution for Protein Docking on IBM Blue Gene, In Proceedings of the Fifth International Symposium on Parallel and Distributed Processing and Applications (ISPA07), Lecture Notes in Computer Science 4742, pp.958-969, Springer, 2007.

T. Kajiyama, A. Nukada, R. Suda, H. Hasegawa, and A. Nishida. A Performance Evaluation Model for the SILC Matrix Computation Framework, In Proceedings of the IFIP International Conference on Network and Parallel Computing (NPC 2006), pp.93-103, October 2-4, 2006 (abstract/slides).

T. Kajiyama, A. Nukada, R. Suda, H. Hasegawa, and A. Nishida. Distributed SILC: An Easy-to-Use Interface for MPI-based Parallel Matrix Computation Libraries. In Proceedings of 2006 Workshop on State-of-the-Art in Scientific and Parallel Computing (PARA'06), Lecture Notes in Computer Science 4699, pp.860-870, Springer, 2007 (abstract/slides).

A. Nishida. Building Cost Effective High Performance Computing Environment via PCI Express. In Proceedings of the 2006 International Conference on Parallel Processing Workshops (ICPPW2006), pp.519-526, IEEE, 2006.

A. Nukada. FFTSS: a High Performance Fast Fourier Transform Library, In Proceedings of the 2006 IEEE International Conference on Acoustics, Speech, and Signal Processing (ICASSP 2006), Vol. III, pp.980-983, IEEE, May 14-19, 2006, Toulouse.

A. Fujii, A. Nishida, and Y. Oyanagi, Evaluation of Parallel Aggregate Creation Orders : Smoothed Aggregation Algebraic Multigrid Method, In IFIP International Federation for Information Processing, Vol. 172, pp.99-122, Springer, 2005.

H. Kotakemori, H. Hasegawa, and A. Nishida, Performance Evaluation of a Parallel Iterative Method Library using OpenMP, In Proceedings of the 8th International Conference on High Performance Computing in Asia Pacific Region (HPC Asia 2005), pp.432-436, IEEE, 2005 (abstract/slides).

T. Kajiyama, A. Nukada, H. Hasegawa, R. Suda, and A. Nishida, LAPACK in SILC: Use of a Flexible Application Framework for Matrix Computation Libraries, In Proceedings of the 8th International Conference on High Performance Computing in Asia Pacific Region (HPC Asia 2005), pp.205-212, IEEE, 2005 (abstract/slides).

A. Fujii, R. Suda, and A. Nishida, Parallel Matrix Distribution Library for Sparse Matrix Solvers, In Proceedings of the 8th International Conference on High Performance Computing in Asia Pacific Region (HPC Asia 2005), pp.213-219, IEEE, 2005 (abstract/slides).

T. Kajiyama, A. Nukada, H. Hasegawa, R. Suda, and A. Nishida, SILC: A Flexible and Environment Independent Interface for Matrix Computation Libraries, In Proceedings of the Sixth International Conference on Parallel Processing and Applied Mathematics (PPAM2005), Lecture Notes in Computer Science 3911, pp.928-935, Springer, 2006 (abstract/slides).

H. Kotakemori, H. Hasegawa, T. Kajiyama, A. Nukada, R. Suda, and A. Nishida, Performance Evaluation of Parallel Sparse Matrix-Vector Products on SGI Altix3700, In Proceedings of the First International Workshop on OpenMP (IWOMP2005), Lecture Notes in Computer Science 4315, pp.153-163, Springer, 2008 (abstract/slides).

Y. Hourai, A. Nishida, and Y. Oyanagi, Network-aware Data Mapping on Parallel Molecular Dynamics, In Proceedings of 11th International Conference on Parallel and Distributed Systems (ICPADS2005), pp.126-132, IEEE, 2005.

R. Suda, Fast spherical harmonic transform routine FLTSS applied to the shallow water test set, Monthly Weather Review, Vol. 133, No. 3, pp. 634-648, 2005.

A. Fujii, A. Nishida, and Y. Oyanagi. The Evaluation of the Aggregate Creation Orders : Smoothed Aggregation Algebraic MultiGrid Method. In Proceedings of International Symposium on High Performance Computational Science and Engineering (HPCSE-04), CDROM, 2004.

R. Suda. Stability analysis of the fast Legendre transform algorithm based on the fast multipole method. Proc. Est. Acad. Sci. Phys. Math., Vol.53, No.2, pp.116-123, Estonian Academiy of Science, 2004.

A. Nishida and Y. Oyanagi. Performance Evaluation of Low Level Multithreaded BLAS Kernels on Intel Processor based cc-NUMA Systems. In Proceedings of 2003 International Workshop on OpenMP:Experiences and Implementations (WOMPEI2003), Lecture Notes in Computer Science 2858, pp.500-510, Springer, 2003.

A. Nishida, Development of General Purpose Numerical Software Infrastructure for Large Scale Scientific Computing, In Annual Report of the Earth Simulator Center, April 2007 - March 2008, The Earth Simulator Center, Japan Agency for Marine-Earth Science and Technology, pp.137-145, 2008.

A. Nishida, A. Nukada, H. Kotakemori, and T. Kajiyama, Development of General Purpose Numerical Software Infrastructure for Large Scale Scientific Computing, In Annual Report of the Earth Simulator Center, April 2006 - March 2007, The Earth Simulator Center, Japan Agency for Marine-Earth Science and Technology, pp.139-144, 2007.

T. Kajiyama, A. Nukada, H. Hasegawa, R. Suda, and A. Nishida, Numerical Simulations in the SILC Matrix Computation Framework, In Proceedings of the International Conference on Computational Methods 2007 (ICCM 2007), p.235, April 4-6, 2007 (abstract/slides).

A. Nishida, H. Kotakemori, A. Fujii, and A. Nukada, Development of Scalable Software Infrastructure on Blue Gene Systems, In Report on the Juelich Blue Gene/L Scaling Workshop 2006 (FZJ-ZAM-IB-2007-02), John von Neumann Institute for Computing, Research Centre Juelich, February, 2007.

A. Nishida, H. Kotakemori, T. Kajiyama, and A. Nukada, Scalable Software Infrastructure Project, SC06, Poster, November 11-17, 2006, Tampa, USA. (poster)

H. Hasegawa, T. Sogabe, T. Ogita, and T. Kajiyama, Comparison of conjugate gradient method for nonsymmetric matrices, In Joint GAMM-SIAM Conference on Applied Linear Algebra (ALA 2006), July 24-27, 2006, Düsseldorf, Germany.

A. Nishida. High Performance Computing over Finite Fields, IEICE ISEC Conference, May 19, 2006.

R. Suda. Fast Spherical Harmonic Transform with the Generalized Fast Multipole Method. 2005 International Conference on Scientific Computation and Differential Equations, May 23-27, 2005, Nagoya.

A. Nishida. AMG Preconditioned Conjugate Gradient Type Methods for Nonsymmetric Eigenproblems. Twelfth Copper Mountain Conference on Multigrid Methods, April 3-8, 2005, Aspen.

A. Nishida. SSI: Overview of Simulation Software Infrastructure for Large Scale Scientific Applications, In Proceedings of the International Workshops on Advances in Computational Mechanics (IWACOM2004), p.163, 2004, Tokyo.

A. Fujii, A. Nishida, and Y. Oyanagi. Vectorized Algebraic Multigrid Algorithm for Unstructured Finite Element Problems. 6th International Meeting on High Performance Computing for Computational Science (VECPAR2004), June 28-30, 2004, Valencia.

A. Nishida. Performance Evaluation of Intel Processor based cc-NUMA Systems for Scalable Iterative Solvers. Eigth Copper Mountain Conference on Iterative Methods, March 28-April 2, 2004, Aspen.

A. Nishida. SSI: Development of Simulation Software Infrastructure. Eleventh SIAM Conference on Parallel Processing for Scientific Computing, February 25-27, 2004, San Francisco.

S. Zhang, and T. Sogabe. The Bi-CR Method for Nonsymmetric Linear Systems. International Conference on Numerical Linear Algebra and Optimization, October 7-11, 2003, Guiling.

K. Abe, S. Zhang, and M. Sugihara. Necessary and Sufficient Conditions for Convergence of GCR and GMRES Methods on Singular Systems. International Conference on Numerical Linear Algebra and Optimization, October 7-11, 2003, Guiling.

R. Suda. FLTSS - the Fast Legendre Transform with Stable Sampling and interpolation. In Proceedings of the Second International Conference on Approximation Methods and Orthogonal Expansions, September 12-14, 2003, Estonia.

K. Nakajima. Implementing SuperLU on Contact Problems. Fourth Workshop on the DOE Advanced Computational Software Collection, August 5-8, 2003, Berkeley.

T. Sogabe, C. Jin, K. Abe, and S. Zhang. On the Improvement of the CGS Method. 5th International Congress on Industrial and Applied Mathematics, July 7-11, 2003, Sydney.

A. Nishida. Efficient Parallel Implementation of Jacobi-Davidson Method for Shared Memory Architectures. 5th International Congress on Industrial and Applied Mathematics, July 7-11, 2003, Sydney.

K. Nakajima. Parallel Iterative Solves for Solid Earth Simulation on the Earth Simulator, Sixth IMACS International Symposium on Iterative Methods in Scientific Computing, March 27-30, 2003, Denver.